Recipes¶
Per-tool sbatch scripts, notes, and helpers live in apps/ in the repo.
These are pre-AI records — hand-written from work I actually ran on Sapelo2 between 2021–2024. Kept as a usage trace and a seed for generating fresh scripts with Claude Code today. Regenerate with the ruleset loaded; don't copy verbatim without re-verifying module versions.
| Tool | Resources | Source |
|---|---|---|
| alphaFold | P100 · 32 CPU · 180 G · 30 d · gpu_30d_p | apps/alphaFold |
| BUSCO | 4 CPU · 10 G · 48 h · batch | apps/busco |
| MCScanX | 1 CPU · 1 G · 168 h · batch | apps/MCScanx |
| nf-core/rnaseq | 32 CPU · 190 G · 124 h · batch | apps/nfcore-rnaseq |
| OmegaFold | A100 · 32 CPU · 180 G · 30 d · gpu_30d_p | apps/omega |
| OrthoFinder | 4 × 32 CPU · 128 G · 168 h · batch | apps/orthoFinder |
| SpeedPPI | A100 · 28 CPU · 32 G · 30 d · gpu_30d_p | apps/SpeedPPI |
| Trinotate | 32 CPU · 408 G · 120 h · highmem_p | apps/Trinotate |
Before submitting anything here, fix: mail-user, input filenames, hardcoded /scratch/<someone>/ paths, module versions. Verify current versions with module avail <name>.
Generic starter templates: sbatch templates.