Pipelines¶
Snakemake pipelines live in pipeline/ in the repo.
| Pipeline | What | Source |
|---|---|---|
| yt_whisper | YouTube URL → audio → Whisper transcription. V100, <4 h on batch. |
pipeline/yt_whisper |
| get_best_hit | Cross-species DIAMOND best-hits for transcriptome annotation. | pipeline/get_best_hit |
For larger pipelines, consider a Snakemake Slurm profile so each rule becomes its own sbatch with per-rule resources — see the --profile flag in the Snakemake docs.